Basic Information
Locus ID:
Thhalv10002378m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_4 | 5533760 | 5538204 | - | Thhalv10002378m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 122,350.79 Da | 50.81 | 68.31 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 166 | 262 | 1.62112E-40 | - |
| CDD | cd13999 | STKc_MAP3K-like | 821 | 1078 | 7.24767E-105 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 819 | 1078 | 3.4E-60 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 181 | 261 | 8.2E-20 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 802 | 1077 | 6.23E-74 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 179 | 261 | 8.24E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 903 | 1096 | 1.3E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 808 | 902 | 4.3E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 181 | 263 | 1.2E-10 | - |
| SMART | SM00220 | serkin_6 | 815 | 1086 | 3.8E-55 | IPR000719 |
| SMART | SM00666 | PB1_new | 177 | 264 | 4.8E-31 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 815 | 1086 | 39.862839 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 940 | 952 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 821 | 846 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1049 | 1071 | 2.9E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1005 | 1027 | 2.9E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 897 | 910 | 2.9E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 934 | 952 | 2.9E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 546 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_006418700.1 | uncharacterized protein LOC18013561 [Eutrema salsugineum] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | V4MXF5 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002378mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology