Basic Information
Locus ID:
Thhalv10002347m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_32 | 27259 | 28648 | + | Thhalv10002347m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 44,447.27 Da | 32.75 | 76.14 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 167 | 195 | 1.0E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 72 | 94 | 0.31 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 138 | 164 | 0.0023 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 101 | 296 | 1.93E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 68 | 333 | 5.8E-26 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 138 | 164 | 0.0019 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 167 | 199 | 1.3E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 164 | 198 | 10.654441 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29710.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_024009772.1 | LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g29710, mitochondrial [Eutrema salsugineum] | 0 |
| Q9C6G2 | Pentatricopeptide repeat-containing protein At1g29710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H67 PE=3 SV=1 | 0 | |
| TrEMBL | V4KIG5 | DYW_deaminase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002347mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology