Basic Information
Locus ID:
Thhalv10002233m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_12 | 242376 | 242819 | - | Thhalv10002233m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 16,845.53 Da | 40.72 | 88.84 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 140 | 9.04747E-40 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 7 | 138 | 7.0E-31 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 145 | 2.96E-36 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 142 | 2.8E-37 | IPR016135 |
| SMART | SM00212 | ubc_7 | 2 | 145 | 4.6E-23 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 145 | 34.096478 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64230.1 | ubiquitin-conjugating enzyme 28. | 0 |
| RefSeq | XP_006408589.2 | ubiquitin-conjugating enzyme E2 28 [Eutrema salsugineum] | 0 |
| Q94F47 | Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1 | 0 | |
| TrEMBL | V4M537 | UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002233mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 20 | Thhalv10001269m.g.v1.0, Thhalv10002197m.g.v1.0 ... |