Basic Information
Locus ID:
Thhalv10002228m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_12 | 2313969 | 2314622 | + | Thhalv10002228m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 16,646.84 Da | 26.51 | 94.12 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 17 | 141 | 1.67447E-40 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 18 | 137 | 1.7E-33 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 10 | 145 | 8.84E-38 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 10 | 146 | 2.8E-39 | IPR016135 |
| SMART | SM00212 | ubc_7 | 6 | 146 | 2.6E-23 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 146 | 32.999748 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08690.1 | ubiquitin-conjugating enzyme 11. | 0 |
| RefSeq | XP_006408715.2 | ubiquitin-conjugating enzyme E2-16 kDa [Eutrema salsugineum] | 0 |
| O74196 | Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides OX=474922 GN=UBC1 PE=2 SV=1 | 0 | |
| TrEMBL | V4MCG6 | UBC core domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002228mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 40 | Thhalv10000486m.g.v1.0, Thhalv10000596m.g.v1.0 ... |