Basic Information
Locus ID:
Thhalv10002215m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_12 | 1594231 | 1594800 | - | Thhalv10002215m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 21,872.10 Da | 46.44 | 75.40 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 143 | 185 | 1.13127E-15 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 185 | 9.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 124 | 186 | 5.3E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 188 | 3.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 184 | 2.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 185 | 12.784338 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58720.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009141435.1 | E3 ubiquitin-protein ligase MBR2 [Brassica rapa] | 0 |
| Q6DIP3 | E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis OX=8364 GN=rnf126 PE=2 SV=1 | 0 | |
| TrEMBL | V4M1X3 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002215mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002215m.g.v1.0 |
| Brassicaceae | Brassica nigra | 24 | BniB01g016270.2N, BniB01g039860.2N, BniB01g039880.2N ... |