halophFGD

Basic Information

Locus ID: Thhalv10002156m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: protein modification by small protein conjugation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_12	988814	989440	+	Thhalv10002156m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.19	13,566.44 Da	26.84	103.17	0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	14	113	8.41337E-32	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	15	71	4.1E-19	IPR000608
SUPERFAMILY	SSF54495	UBC-like	13	117	3.72E-28	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	10	74	1.6E-23	IPR016135
SMART	SM00212	ubc_7	7	118	1.8E-8	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	1	120	20.747684	IPR000608

KEGG Pathway

KO Term:

K06689 (ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G08690.1	ubiquitin-conjugating enzyme 11.
RefSeq	XP_006414907.1	ubiquitin-conjugating enzyme E2-16 kDa [Eutrema salsugineum]
Swiss-Prot	O74196	Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides OX=474922 GN=UBC1 PE=2 SV=1
TrEMBL	V4NTP1	UBC core domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10002156mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	40	Thhalv10000486m.g.v1.0, Thhalv10000596m.g.v1.0 ... Thhalv10000614m.g.v1.0, Thhalv10000665m.g.v1.0, Thhalv10001869m.g.v1.0, Thhalv10002156m.g.v1.0, Thhalv10002228m.g.v1.0, Thhalv10002871m.g.v1.0, Thhalv10002909m.g.v1.0, Thhalv10002914m.g.v1.0, Thhalv10003007m.g.v1.0, Thhalv10003047m.g.v1.0, Thhalv10003377m.g.v1.0, Thhalv10003398m.g.v1.0, Thhalv10003410m.g.v1.0, Thhalv10005415m.g.v1.0, Thhalv10005459m.g.v1.0, Thhalv10010994m.g.v1.0, Thhalv10011972m.g.v1.0, Thhalv10012188m.g.v1.0, Thhalv10012195m.g.v1.0, Thhalv10015327m.g.v1.0, Thhalv10015453m.g.v1.0, Thhalv10015713m.g.v1.0, Thhalv10016072m.g.v1.0, Thhalv10017582m.g.v1.0, Thhalv10017952m.g.v1.0, Thhalv10019508m.g.v1.0, Thhalv10022481m.g.v1.0, Thhalv10023800m.g.v1.0, Thhalv10023857m.g.v1.0, Thhalv10026772m.g.v1.0, Thhalv10026805m.g.v1.0, Thhalv10026912m.g.v1.0, Thhalv10028035m.g.v1.0, Thhalv10028306m.g.v1.0, Thhalv10029250m.g.v1.0, Thhalv10029290m.g.v1.0, Thhalv10029324m.g.v1.0, Thhalv10029500m.g.v1.0