Basic Information
Locus ID:
Thhalv10001878m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ABC transporter C family member 5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_12 | 10628999 | 10634624 | + | Thhalv10001878m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 167,939.17 Da | 40.61 | 107.58 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1262 | 1482 | 1.6734E-113 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 619 | 819 | 4.91775E-103 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 945 | 1239 | 4.5887E-93 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 306 | 593 | 8.71189E-103 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 639 | 771 | 8.7E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1281 | 1429 | 1.3E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 309 | 573 | 8.8E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 948 | 1188 | 1.3E-27 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1254 | 1493 | 3.2E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 293 | 601 | 1.28E-38 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 841 | 1.07E-53 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 932 | 1244 | 1.18E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 277 | 602 | 1.2E-53 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 906 | 1245 | 5.8E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1248 | 1500 | 1.4E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 613 | 847 | 2.0E-70 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1290 | 1475 | 8.7E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 646 | 827 | 8.5E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 308 | 585 | 35.598011 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 947 | 1217 | 36.531601 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1264 | 1498 | 17.28705 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 619 | 842 | 22.575806 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 744 | 758 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 909 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_006408953.1 | ABC transporter C family member 5 [Eutrema salsugineum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | V4NUG4 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001878mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology