halophFGD

Basic Information

Locus ID: Thhalv10001875m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: protein modification by small protein conjugation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_23	770024	770443	+	Thhalv10001875m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.75	16,287.83 Da	40.48	65.25	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	29	133	5.35984E-27	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	28	131	2.9E-20	IPR000608
SUPERFAMILY	SSF54495	UBC-like	28	138	8.39E-26	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	22	139	2.2E-27	IPR016135
SMART	SM00212	ubc_7	6	138	6.3E-7	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	1	138	19.95647	IPR000608

KEGG Pathway

KO Term:

K06689 (ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G08690.1	ubiquitin-conjugating enzyme 11.
RefSeq	XP_024009263.1	ubiquitin-conjugating enzyme E2 11 [Eutrema salsugineum]
Swiss-Prot	P35129	Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans OX=6239 GN=let-70 PE=1 SV=1
TrEMBL	V4KLY6	UBC core domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001875mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	35	Thhalv10000429m.g.v1.0, Thhalv10000688m.g.v1.0 ... Thhalv10001843m.g.v1.0, Thhalv10001875m.g.v1.0, Thhalv10002315m.g.v1.0, Thhalv10002907m.g.v1.0, Thhalv10002995m.g.v1.0, Thhalv10003031m.g.v1.0, Thhalv10003044m.g.v1.0, Thhalv10003116m.g.v1.0, Thhalv10003324m.g.v1.0, Thhalv10003483m.g.v1.0, Thhalv10003488m.g.v1.0, Thhalv10005535m.g.v1.0, Thhalv10005558m.g.v1.0, Thhalv10012091m.g.v1.0, Thhalv10012239m.g.v1.0, Thhalv10015544m.g.v1.0, Thhalv10019438m.g.v1.0, Thhalv10019593m.g.v1.0, Thhalv10019831m.g.v1.0, Thhalv10022476m.g.v1.0, Thhalv10022482m.g.v1.0, Thhalv10022507m.g.v1.0, Thhalv10022977m.g.v1.0, Thhalv10022978m.g.v1.0, Thhalv10023041m.g.v1.0, Thhalv10023092m.g.v1.0, Thhalv10024139m.g.v1.0, Thhalv10027043m.g.v1.0, Thhalv10027537m.g.v1.0, Thhalv10028325m.g.v1.0, Thhalv10029177m.g.v1.0, Thhalv10029257m.g.v1.0, Thhalv10029316m.g.v1.0