Basic Information
Locus ID:
Thhalv10001609m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_22 | 1688167 | 1689191 | - | Thhalv10001609m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 26,783.43 Da | 83.00 | 89.34 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 108 | 151 | 2.67058E-16 | - |
| Pfam | PF13639 | Ring finger domain | 108 | 151 | 5.1E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 159 | 7.78E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 157 | 3.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 109 | 150 | 6.9E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 105 | 158 | 0.0034 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 151 | 13.462976 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 193 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006397951.1 | RING-H2 finger protein ATL64 [Eutrema salsugineum] | 0 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 0 | |
| TrEMBL | V4L6U6 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001609mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology