halophFGD

Basic Information

Locus ID: Thhalv10001535m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_22	662951	664224	+	Thhalv10001535m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.06	38,954.97 Da	44.76	87.48	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	4	43	2.0E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	2	70	2.09E-12	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	1	68	2.9E-7	-
ProSiteProfiles	PS50181	F-box domain profile.	1	49	10.689717	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G28223.1	F-box family protein.
RefSeq	XP_024010856.1	F-box protein At3g28330 [Eutrema salsugineum]
Swiss-Prot	Q9LHD3	F-box protein At3g28330 OS=Arabidopsis thaliana OX=3702 GN=At3g28330 PE=4 SV=2
TrEMBL	V4L9U1	F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001535mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	10	AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... AT3G26010.1, AT3G28223.1, AT3G28280.1, AT3G28330.1, AT3G48220.1, AT4G22430.1
Brassicaceae	Eutrema salsugineum	14	Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... Thhalv10009395m.g.v1.0, Thhalv10009727m.g.v1.0, Thhalv10011517m.g.v1.0, Thhalv10013759m.g.v1.0, Thhalv10019528m.g.v1.0, Thhalv10022100m.g.v1.0, Thhalv10023522m.g.v1.0, Thhalv10023870m.g.v1.0, Thhalv10024137m.g.v1.0, Thhalv10027176m.g.v1.0, Thhalv10028185m.g.v1.0, Thhalv10029227m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... Sp5g25320.v2.2, SpUn0003_0080.v2.2, SpUn0137_0030.v2.2
Brassicaceae	Brassica nigra	20	BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... BniB02g040930.2N, BniB02g041990.2N, BniB02g042880.2N, BniB02g072790.2N, BniB02g080470.2N, BniB03g022200.2N, BniB04g006950.2N, BniB04g019910.2N, BniB04g057180.2N, BniB04g057190.2N, BniB04g060460.2N, BniB04g060490.2N, BniB04g060520.2N, BniB05g016030.2N, BniB05g026460.2N, BniB06g034010.2N, BniB06g034020.2N
Plantaginaceae	Plantago ovata	1	Pov_00032378