Basic Information
Locus ID:
Thhalv10001500m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
BEST Arabidopsis thaliana protein match is Ring U-Box superfamily protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_22 | 1228645 | 1230160 | - | Thhalv10001500m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 41,314.10 Da | 56.18 | 85.80 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 322 | 364 | 7.42134E-15 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 25 | 93 | 7.8E-17 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 321 | 364 | 5.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 367 | 3.83E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 369 | 5.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 322 | 363 | 9.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 364 | 12.090947 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006397839.1 | putative RING-H2 finger protein ATL21A isoform X1 [Eutrema salsugineum] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | V4LA85 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001500mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology