Basic Information
Locus ID:
Thhalv10001463m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_22 | 864725 | 866230 | - | Thhalv10001463m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 42,774.08 Da | 47.54 | 96.00 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 198 | 328 | 2.7E-18 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 183 | 329 | 2.49E-22 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 31 | 175 | 1.57E-14 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 26 | 178 | 7.5E-8 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 190 | 329 | 1.8E-14 | IPR036378 |
| SMART | SM00554 | fasc_3 | 224 | 329 | 1.7E-18 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 326 | 17.107653 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 25 | 172 | 8.821439 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 373 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45470.1 | FASCICLIN-like arabinogalactan protein 8. | 0 |
| RefSeq | XP_006397729.1 | fasciclin-like arabinogalactan protein 8 [Eutrema salsugineum] | 0 |
| O22126 | Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1 | 0 | |
| TrEMBL | V4L9Y0 | Fasciclin-like arabinogalactan protein 8 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001463mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology