Basic Information
Locus ID:
Thhalv10001423m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_22 | 1456081 | 1457737 | + | Thhalv10001423m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 55,635.11 Da | 49.83 | 104.39 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 18 | 52 | 1.9E-6 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 202 | 437 | 6.8E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 71 | 3.53E-12 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 180 | 468 | 7.0E-10 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 61 | 4.0E-8 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 8.9E-5 | IPR001810 |
| SMART | SM00579 | 9598neu4hmm | 423 | 490 | 0.0018 | IPR006566 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 62 | 11.299088 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25860.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_024010861.1 | putative F-box/LRR-repeat protein At5g25860 [Eutrema salsugineum] | 0 |
| Q3E7J7 | Putative F-box/LRR-repeat protein At5g25860 OS=Arabidopsis thaliana OX=3702 GN=At5g25860 PE=4 SV=1 | 0 | |
| TrEMBL | V4N2C9 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001423mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G25860.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10001423m.g.v1.0, Thhalv10025492m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g041250.2N |