Basic Information
Locus ID:
Thhalv10001400m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_22 | 1595509 | 1598995 | + | Thhalv10001400m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 58,567.22 Da | 66.81 | 54.77 | -1.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 446 | 477 | 1.8E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 346 | 428 | 1.1E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 346 | 431 | 1.4E-28 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| Coils | Coil | Coil | 335 | 372 | - | - |
| Coils | Coil | Coil | 388 | 408 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_006397928.1 | stress response protein nst1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4N2G0 | PAPA-1 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001400mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology