Basic Information
Locus ID:
Thhalv10001352m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_22 | 184105 | 186084 | + | Thhalv10001352m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 74,613.63 Da | 34.42 | 93.66 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 26 | 252 | 1.29245E-73 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 335 | 540 | 1.4E-47 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 25 | 248 | 1.4E-58 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 22 | 269 | 7.93E-65 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 316 | 616 | 4.32E-78 | IPR011009 |
| Gene3D | G3DSA:2.60.120.200 | - | 17 | 255 | 1.9E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 412 | 622 | 7.1E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 320 | 411 | 1.4E-31 | - |
| SMART | SM00220 | serkin_6 | 335 | 593 | 3.4E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 335 | 593 | 38.265697 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 341 | 364 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 457 | 469 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43700.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_006397543.2 | L-type lectin-domain containing receptor kinase V.4 isoform X1 [Eutrema salsugineum] | 0 |
| O22833 | L-type lectin-domain containing receptor kinase V.4 OS=Arabidopsis thaliana OX=3702 GN=LECRK54 PE=2 SV=1 | 0 | |
| TrEMBL | V4N1M6 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001352mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G43690.1, AT2G43700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001352m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB01g002460.2N, BniB01g002480.2N, BniB08g028550.2N |