Basic Information
Locus ID:
Thhalv10001310m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_22 | 987340 | 991028 | - | Thhalv10001310m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 92,666.69 Da | 49.39 | 84.99 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 763 | 804 | 6.26357E-25 | - |
| CDD | cd01989 | STK_N | 46 | 199 | 1.28564E-51 | - |
| Pfam | PF00069 | Protein kinase domain | 481 | 726 | 9.0E-41 | IPR000719 |
| Pfam | PF04564 | U-box domain | 759 | 829 | 2.3E-18 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 454 | 728 | 1.62E-64 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 759 | 829 | 4.06E-24 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 46 | 164 | 4.77E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 550 | 750 | 2.5E-46 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 40 | 167 | 1.5E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 456 | 549 | 3.7E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 759 | 829 | 3.5E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 762 | 825 | 1.5E-30 | IPR003613 |
| SMART | SM00220 | serkin_6 | 477 | 739 | 1.9E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 477 | 740 | 33.95483 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 758 | 830 | 35.764931 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 595 | 607 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 483 | 504 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 261 | - | - |
| Coils | Coil | Coil | 381 | 457 | - | - |
| Coils | Coil | Coil | 332 | 352 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_024010755.1 | U-box domain-containing protein 33 [Eutrema salsugineum] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | V4LA06 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001310mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology