Basic Information
Locus ID:
Thhalv10001235m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_20 | 2075137 | 2076522 | + | Thhalv10001235m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 32,766.46 Da | 41.45 | 72.86 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 66 | 4.1E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 5 | 84 | 1.11E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 74 | 4.9E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 8.1E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 10.83774 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 106 | - | - |
| Coils | Coil | Coil | 275 | 295 | - | - |
| Coils | Coil | Coil | 236 | 263 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46870.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_024011071.1 | binding partner of ACD11 1 [Eutrema salsugineum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L847 | RRM domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001235mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology