Basic Information
Locus ID:
Thhalv10001134m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_20 | 904232 | 906057 | - | Thhalv10001134m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 37,229.69 Da | 38.83 | 90.22 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 169 | 275 | 1.1E-15 | IPR013187 |
| Pfam | PF00646 | F-box domain | 3 | 40 | 1.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 72 | 2.09E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 39 | 9.9E-6 | - |
| SMART | SM00256 | fbox_2 | 3 | 42 | 9.3E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 86 | 248 | 1.7E-24 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 10.318796 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010494598.1 | PREDICTED: F-box protein At1g30790-like [Camelina sativa] | 0 |
| Q9SY20 | F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2 | 0 | |
| TrEMBL | V4N327 | F-box domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001134mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001134m.g.v1.0, Thhalv10003422m.g.v1.0 |