Basic Information
Locus ID:
Thhalv10000916m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Contains the following InterPro domains WD40 repeat-like-containing domain (InterPro IPR011046), WD40 repeat 2 (InterPro IPR019782), WD40-repeat-containing domain (InterPro IPR017986), WD40 repeat (InterPro IPR001680), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat, subgroup (InterPro IPR019781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_20 | 2653371 | 2655896 | - | Thhalv10000916m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 42,499.72 Da | 41.96 | 91.00 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 173 | 0.03 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 42 | 342 | 1.57E-30 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 355 | 7.3E-58 | IPR015943 |
| SMART | SM00320 | WD40_4 | 311 | 349 | 0.87 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 174 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 178 | 215 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 306 | 9.1 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006398538.2 | SEC12-like protein 2 [Eutrema salsugineum] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | V4N3W3 | WD_REPEATS_REGION domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000916mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology