Basic Information
Locus ID:
Thhalv10000821m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_20 | 2575175 | 2577754 | - | Thhalv10000821m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 66,464.42 Da | 34.65 | 85.82 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 56 | 350 | 6.08014E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 260 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 489 | 522 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 184 | 216 | 0.05 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 536 | 564 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 84 | 0.017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 230 | 376 | 4.94E-16 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 46 | 568 | 5.02E-50 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 340 | 2.2E-186 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 609 | 2.2E-186 | IPR015943 |
| SMART | SM00320 | WD40_4 | 483 | 522 | 8.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 569 | 608 | 0.0054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 354 | 0.65 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 261 | 9.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 174 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 439 | 477 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 527 | 565 | 5.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 133 | 86.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 0.0026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 310 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 216 | 3.3E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 225 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 577 | 612 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 533 | 574 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 229 | 270 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 229 | 263 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 53 | 94 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 490 | 531 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 490 | 522 | 9.968326 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 577 | 612 | 10.23196 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 248 | 262 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01330.1 | nucleotide binding. | 0 |
| RefSeq | XP_006398521.1 | actin-interacting protein 1-1 [Eutrema salsugineum] | 0 |
| Q9ZU34 | Actin-interacting protein 1-1 OS=Arabidopsis thaliana OX=3702 GN=AIP1-1 PE=1 SV=1 | 0 | |
| TrEMBL | V4L8K4 | WD_REPEATS_REGION domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000821mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27003 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18574 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025366 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g142710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12911, Sbi_jg52955 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8902 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023461 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl31060, Sgl36432 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001482, gene:ENSEOMG00000001942 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0012400, CQ.Regalona.r1.6BG0013000 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30150180, pistato.v30216710, pistato.v30216990 |
| Apiaceae | Apium graveolens | 3 | Ag3G02196, Ag7G01231, Ag9G02820 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G005740, COCNU_03G009290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696946, gene-LOC103718996 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G32192 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G01330.1, AT3G18060.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000821m.g.v1.0, Thhalv10020321m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g12780.v2.2, Sp3g16180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046530.2N, BniB04g014820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2859 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G3006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g14440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g20160 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.13 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033251 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G36913, Lb0G37557, Lb2G13245 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1254, BH02.838, CH02.956 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007980, gene-QOZ80_1BG0056760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0222780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049136 |
| Poaceae | Oryza coarctata | 2 | Oco01G000970, Oco02G001000 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g03510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G081000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205513, Pt_Chr0206978 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G024520, Chr03G003360, Chr05G002430, Chr20G008630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G060700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG005380, gene_TRIDC3BG004980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G047800.1, TraesCS3B02G034400.1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb076360_P001, Zm00001eb125700_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7093 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9879 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.802, evm.TU.LG21.477 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g21510, gene.Posoc04g21560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.732 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14401 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14439 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12347 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008891 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14443, nbisL1-mrna-934 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24870, nbisL1-mrna-8406 |
| Salicaceae | Populus euphratica | 2 | populus_peu28281, populus_peu29733 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633242 |
| Solanaceae | Solanum chilense | 1 | SOLCI000442600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014336 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9226_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0994 |
| Zosteraceae | Zostera marina | 1 | Zosma04g19370.v3.1 |