Basic Information
Locus ID:
Thhalv10000817m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_20 | 1382660 | 1385460 | - | Thhalv10000817m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 70,018.78 Da | 38.80 | 98.70 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 50 | 89 | 2.2E-9 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 315 | 583 | 3.9E-43 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 117 | 156 | 2.5E-6 | IPR025875 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 294 | 586 | 1.5E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 210 | 1.45E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 49 | 231 | 1.3E-54 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 389 | 600 | 3.9E-61 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 283 | 388 | 3.0E-36 | - |
| SMART | SM00220 | serkin_6 | 313 | 584 | 4.6E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 313 | 589 | 36.527214 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 435 | 447 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 319 | 341 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45780.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006398263.1 | probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Eutrema salsugineum] | 0 |
| C0LGU5 | Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana OX=3702 GN=At5g45780 PE=1 SV=1 | 0 | |
| TrEMBL | V4N388 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000817mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology