Basic Information
Locus ID:
Thhalv10000808m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_20 | 2026823 | 2030947 | + | Thhalv10000808m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 73,135.36 Da | 44.31 | 71.11 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 483 | 560 | 3.36699E-50 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 110 | 295 | 4.7E-53 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 490 | 535 | 1.5E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 489 | 555 | 2.88E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 485 | 561 | 6.9E-17 | IPR036638 |
| SMART | SM00353 | finulus | 492 | 541 | 9.8E-17 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 486 | 535 | 17.281994 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 179 | - | - |
| Coils | Coil | Coil | 532 | 559 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46760.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_024010949.1 | transcription factor MYC3 [Eutrema salsugineum] | 0 |
| Q9FIP9 | Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1 | 0 | |
| TrEMBL | V4L837 | BHLH domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000808mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology