Basic Information
Locus ID:
Thhalv10000704m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 3303682 | 3304979 | + | Thhalv10000704m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 47,502.54 Da | 49.51 | 88.46 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 50 | 4.6E-4 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 78 | 375 | 7.72E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 80 | 3.01E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 66 | 2.4E-5 | - |
| SMART | SM00256 | fbox_2 | 14 | 53 | 0.0011 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G28330.1 | F-box family protein-related. | 0 |
| RefSeq | XP_024013939.1 | F-box protein At3g28330 [Eutrema salsugineum] | 0 |
| Q9LHD3 | F-box protein At3g28330 OS=Arabidopsis thaliana OX=3702 GN=At3g28330 PE=4 SV=2 | 0 | |
| TrEMBL | V4NJG0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000704mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 10 | AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... |
| Brassicaceae | Brassica nigra | 20 | BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032378 |