halophFGD

Basic Information

Locus ID: Thhalv10000550m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Short Name: TPX1

Description: peroxiredoxin activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_15	5505132	5505551	+	Thhalv10000550m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.19	15,876.19 Da	34.22	94.46	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07734	F-box associated	1	119	5.9E-32	IPR006527
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	2	85	1.8E-10	IPR017451

Best hit

Source	Best Hit ID	Description
TAIR	AT3G22940.1	F-box associated ubiquitination effector family protein.
RefSeq	XP_020888665.1	LOW QUALITY PROTEIN: putative F-box protein At3g22940 [Arabidopsis lyrata subsp. lyrata]
Swiss-Prot	Q9LIK3	Putative F-box protein At3g22940 OS=Arabidopsis thaliana OX=3702 GN=At3g22940 PE=4 SV=1
TrEMBL	V4L882	FBA_1 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000550mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	5	Thhalv10000550m.g.v1.0, Thhalv10000638m.g.v1.0 ... Thhalv10017545m.g.v1.0, Thhalv10017624m.g.v1.0, Thhalv10027497m.g.v1.0