Basic Information
Locus ID:
Thhalv10000539m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
polyadenylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 731228 | 732393 | + | Thhalv10000539m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 38,692.54 Da | 45.48 | 89.46 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 63 | 4.4E-8 | IPR001810 |
| Pfam | PF07734 | F-box associated | 169 | 324 | 1.6E-20 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 73 | 8.11E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 80 | 8.1E-7 | - |
| SMART | SM00256 | fbox_2 | 23 | 63 | 2.7E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 168 | 295 | 3.6E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 68 | 9.179537 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11620.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_024014234.1 | LOW QUALITY PROTEIN: putative F-box/LRR-repeat/kelch-repeat protein At1g11620 [Eutrema salsugineum] | 0 |
| Q9SAB5 | Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana OX=3702 GN=At1g11620 PE=4 SV=1 | 0 | |
| TrEMBL | V4L6Z0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000539mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G31510.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000539m.g.v1.0, Thhalv10011016m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 5 | BniB02g006350.2N, BniB08g012450.2N, BniB08g064620.2N ... |