Basic Information
Locus ID:
Thhalv10000440m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 733054 | 734172 | - | Thhalv10000440m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 42,342.97 Da | 50.02 | 82.18 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 70 | 7.2E-8 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 76 | 354 | 1.7E-31 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 68 | 3.4E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 66 | 341 | 5.8E-20 | IPR015915 |
| SMART | SM00256 | fbox_2 | 29 | 69 | 4.7E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 69 | 8.702637 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02310.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006404678.1 | putative F-box/kelch-repeat protein At4g02310 [Eutrema salsugineum] | 0 |
| O81414 | Putative F-box/kelch-repeat protein At4g02310 OS=Arabidopsis thaliana OX=3702 GN=At4g02310 PE=4 SV=1 | 0 | |
| TrEMBL | V4NIQ1 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000440mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G02310.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000440m.g.v1.0, Thhalv10000680m.g.v1.0 ... |