halophFGD

Basic Information

Locus ID: Thhalv10000429m.g.v1.0

Species & Taxonomic ID: Eutrema salsugineum & 72664

Genome Assembly: GCF_000478725.1

Description: protein modification by small protein conjugation

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold_15	1449606	1449947	+	Thhalv10000429m.g.v1.0

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.85	13,314.16 Da	33.03	85.40	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00179	Ubiquitin-conjugating enzyme	8	103	2.3E-12	IPR000608
SUPERFAMILY	SSF54495	UBC-like	8	112	3.48E-17	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	3	113	1.4E-16	IPR016135

KEGG Pathway

KO Term:

K06689 (ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G57870.1	sumo conjugation enzyme 1. Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.
RefSeq	XP_006404758.1	ubiquitin-conjugating enzyme E2 D2 [Eutrema salsugineum]
Swiss-Prot	Q1RMX2	Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus OX=9913 GN=UBE2D2 PE=2 SV=1
TrEMBL	V4NIW7	UBC core domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000429mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Eutrema salsugineum	35	Thhalv10000429m.g.v1.0, Thhalv10000688m.g.v1.0 ... Thhalv10001843m.g.v1.0, Thhalv10001875m.g.v1.0, Thhalv10002315m.g.v1.0, Thhalv10002907m.g.v1.0, Thhalv10002995m.g.v1.0, Thhalv10003031m.g.v1.0, Thhalv10003044m.g.v1.0, Thhalv10003116m.g.v1.0, Thhalv10003324m.g.v1.0, Thhalv10003483m.g.v1.0, Thhalv10003488m.g.v1.0, Thhalv10005535m.g.v1.0, Thhalv10005558m.g.v1.0, Thhalv10012091m.g.v1.0, Thhalv10012239m.g.v1.0, Thhalv10015544m.g.v1.0, Thhalv10019438m.g.v1.0, Thhalv10019593m.g.v1.0, Thhalv10019831m.g.v1.0, Thhalv10022476m.g.v1.0, Thhalv10022482m.g.v1.0, Thhalv10022507m.g.v1.0, Thhalv10022977m.g.v1.0, Thhalv10022978m.g.v1.0, Thhalv10023041m.g.v1.0, Thhalv10023092m.g.v1.0, Thhalv10024139m.g.v1.0, Thhalv10027043m.g.v1.0, Thhalv10027537m.g.v1.0, Thhalv10028325m.g.v1.0, Thhalv10029177m.g.v1.0, Thhalv10029257m.g.v1.0, Thhalv10029316m.g.v1.0