Basic Information
Locus ID:
Thhalv10000313m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
E3 ubiquitin-protein ligase RNF185-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 2256201 | 2257528 | - | Thhalv10000313m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 25,587.70 Da | 37.44 | 60.65 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 24 | 68 | 1.10362E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 25 | 66 | 1.2E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 18 | 79 | 2.53E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 89 | 7.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 26 | 66 | 7.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 26 | 67 | 13.43347 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 41 | 50 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 117 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006404861.1 | E3 ubiquitin-protein ligase RNF185 [Eutrema salsugineum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | V4LR70 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000313mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology