Basic Information
Locus ID:
Thhalv10000252m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 589506 | 592720 | + | Thhalv10000252m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 35,602.31 Da | 51.83 | 93.25 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 28 | 76 | 1.27728E-15 | - |
| Pfam | PF12906 | RING-variant domain | 28 | 75 | 2.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 80 | 1.61E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 88 | 1.5E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 27 | 76 | 7.6E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 20 | 82 | 20.178141 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006404662.1 | uncharacterized protein LOC18022310 [Eutrema salsugineum] | 0 |
| TrEMBL | V4L6X6 | RING-CH-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000252mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology