Basic Information
Locus ID:
Thhalv10000246m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 127954 | 130652 | + | Thhalv10000246m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 35,953.28 Da | 53.89 | 66.30 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 185 | 4.9E-79 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 3 | 108 | 3.6E-44 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 110 | 183 | 4.8E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 271 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_006404567.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Eutrema salsugineum] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | V4L6Q6 | Ubiquitin fusion degradation protein 1 homolog OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000246mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology