Basic Information
Locus ID:
Thhalv10000201m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
GGPS2
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 2283982 | 2285330 | - | Thhalv10000201m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 41,422.31 Da | 47.66 | 101.20 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 111 | 373 | 7.42807E-90 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 111 | 344 | 1.6E-54 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 87 | 359 | 5.96E-85 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 77 | 375 | 9.5E-103 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 160 | 176 | - | IPR033749 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 293 | 305 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 87 | 373 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 87 | 373 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23800.1 | geranylgeranyl pyrophosphate synthase 2. encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase | 0 |
| RefSeq | XP_006404866.1 | heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 isoform X1 [Eutrema salsugineum] | 0 |
| O04046 | Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GGPPS2 PE=1 SV=2 | 0 | |
| TrEMBL | V4LR73 | Dimethylallyltranstransferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000201mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology