Basic Information
Locus ID:
Thhalv10000147m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 1543768 | 1545492 | + | Thhalv10000147m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 55,158.53 Da | 37.28 | 91.83 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 211 | 430 | 7.0E-69 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 30 | 121 | 1.3E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 23 | 121 | 4.0E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 127 | 4.6E-9 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 454 | 79.623306 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 102 | 9.578812 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 474 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23050.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_006404771.1 | BTB/POZ domain-containing protein NPY4 isoform X1 [Eutrema salsugineum] | 0 |
| O64814 | Phototropic-responsive NPH3 family protein NPY4 OS=Arabidopsis thaliana OX=3702 GN=NPY4 PE=2 SV=1 | 0 | |
| TrEMBL | V4LQZ1 | NPH3 domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000147mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology