Basic Information
Locus ID:
Thhalv10000100m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 464064 | 466541 | + | Thhalv10000100m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 68,340.66 Da | 51.22 | 73.27 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 409 | 452 | 2.9E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 59 | 107 | 7.4E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 281 | 328 | 1.4E-9 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 34 | 111 | 5.34E-15 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 519 | 559 | 7.36E-5 | IPR011011 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 434 | 520 | 1.7E-15 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 154 | 211 | 1.67E-8 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 266 | 337 | 1.5E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 211 | 264 | 4.18E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 417 | 469 | 1.7E-5 | IPR013083 |
| SMART | SM00249 | PHD_3 | 233 | 306 | 1.1 | IPR001965 |
| SMART | SM00249 | PHD_3 | 371 | 430 | 1.7 | IPR001965 |
| SMART | SM00249 | PHD_3 | 480 | 551 | 17.0 | IPR001965 |
| SMART | SM00109 | c1_12 | 277 | 333 | 0.2 | IPR002219 |
| SMART | SM00109 | c1_12 | 414 | 457 | 0.1 | IPR002219 |
| SMART | SM00109 | c1_12 | 221 | 270 | 0.28 | IPR002219 |
| SMART | SM00109 | c1_12 | 358 | 403 | 3.9 | IPR002219 |
| SMART | SM00109 | c1_12 | 468 | 512 | 0.37 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 413 | 459 | 8.388201 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21840.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_018467686.1 | PREDICTED: uncharacterized protein LOC108839421 [Raphanus sativus] | 0 |
| TrEMBL | V4NIM2 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000100mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |