Basic Information
Locus ID:
Thhalv10000096m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Cysteine Histidine-rich C1 domain family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 617750 | 620301 | - | Thhalv10000096m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 69,270.13 Da | 49.52 | 80.18 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 59 | 107 | 1.3E-6 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 154 | 219 | 2.58E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 462 | 567 | 1.18E-10 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 226 | 305 | 5.44E-13 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 373 | 484 | 3.92E-7 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 34 | 108 | 5.02E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 208 | 314 | 5.9E-5 | IPR013083 |
| SMART | SM00109 | c1_12 | 514 | 568 | 0.017 | IPR002219 |
| SMART | SM00109 | c1_12 | 349 | 397 | 1.4 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 515 | 568 | 8.242701 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21840.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_009127564.1 | uncharacterized protein LOC103852411 [Brassica rapa] | 0 |
| TrEMBL | V4LUF9 | Phorbol-ester/DAG-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000096mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |