Basic Information
Locus ID:
Thhalv10000091m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
LYK4
Description:
Protein kinase family protein peptidoglycan-binding LysM domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 2253505 | 2255528 | - | Thhalv10000091m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 67,131.42 Da | 39.02 | 92.20 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 128 | 173 | 0.00362487 | IPR018392 |
| Pfam | PF01476 | LysM domain | 196 | 240 | 3.8E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 129 | 174 | 3.9E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 390 | 602 | 1.8E-38 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 347 | 608 | 3.19E-59 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 125 | 175 | 1.2E-6 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 337 | 424 | 3.2E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 425 | 616 | 5.0E-46 | - |
| SMART | SM00257 | LysM_2 | 195 | 240 | 0.058 | IPR018392 |
| SMART | SM00257 | LysM_2 | 128 | 174 | 6.5E-7 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 288 | 607 | 30.096245 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 194 | 239 | 11.059345 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 127 | 173 | 11.276593 | IPR018392 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 467 | 479 | - | IPR008266 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 270 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_006404860.1 | lysM domain receptor-like kinase 4 [Eutrema salsugineum] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | V4M265 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000091mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology