Basic Information
Locus ID:
Thhalv10000088m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 3610499 | 3614172 | - | Thhalv10000088m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 70,252.43 Da | 50.89 | 72.54 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 163 | 468 | 3.18393E-162 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 164 | 467 | 1.9E-37 | IPR001394 |
| Pfam | PF01753 | MYND finger | 63 | 100 | 1.3E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 59 | 101 | 6.28E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 160 | 474 | 1.96E-83 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 48 | 104 | 1.1E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 161 | 481 | 3.0E-86 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 63 | 100 | 12.328604 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 164 | 470 | 47.041386 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 63 | 100 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 165 | 180 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 610 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 508 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_006405001.1 | ubiquitin carboxyl-terminal hydrolase 19 [Eutrema salsugineum] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | V4LRK0 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000088mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology