Basic Information
Locus ID:
Thhalv10000087m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Short Name:
EBF1
Description:
Ein3-binding F box protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 6382414 | 6385518 | + | Thhalv10000087m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 67,279.04 Da | 38.29 | 103.98 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 207 | 230 | 0.0011 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 233 | 256 | 1.9 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 551 | 570 | 0.19 | IPR001611 |
| Pfam | PF12937 | F-box-like | 68 | 102 | 7.6E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 158 | 631 | 3.92E-32 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 65 | 104 | 1.31E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 167 | 408 | 8.89E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 436 | 633 | 5.3E-32 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 61 | 107 | 5.3E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 233 | 435 | 1.7E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 155 | 232 | 5.2E-18 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 391 | 416 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 445 | 470 | 0.05 | IPR006553 |
| SMART | SM00256 | fbox_2 | 70 | 114 | 6.6E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 548 | 572 | 0.0031 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 259 | 284 | 0.0032 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 522 | 547 | 60.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 233 | 258 | 1.4E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 574 | 599 | 0.17 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 181 | 206 | 0.0019 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 497 | 520 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 365 | 390 | 68.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 339 | 364 | 0.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 207 | 232 | 3.0E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 471 | 496 | 0.21 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_006405190.1 | EIN3-binding F-box protein 1 [Eutrema salsugineum] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | V4M333 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000087mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology