Basic Information
Locus ID:
Thhalv10000070m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 6842600 | 6846978 | - | Thhalv10000070m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 75,350.35 Da | 40.55 | 85.51 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 462 | 492 | 0.0045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 322 | 645 | 3.05E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 319 | 651 | 2.2E-25 | IPR015943 |
| SMART | SM00667 | Lish | 117 | 149 | 3.5E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 415 | 453 | 29.0 | IPR001680 |
| SMART | SM00668 | ctlh | 147 | 205 | 3.6E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 456 | 495 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 592 | 2.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 463 | 494 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 117 | 149 | 9.861941 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 147 | 205 | 10.017941 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 675 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25420.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006405207.2 | topless-related protein 4 isoform X2 [Eutrema salsugineum] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | V4L8C7 | WD_REPEATS_REGION domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000070mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30250150 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G25420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000070m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g04630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g032840.2N |