Basic Information
Locus ID:
Thhalv10000015m.g.v1.0
Species & Taxonomic ID:
Eutrema salsugineum & 72664
Genome Assembly:
GCF_000478725.1
Description:
Domain in SPla and the RYanodine Receptor.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_15 | 543905 | 549156 | - | Thhalv10000015m.g.v1.0 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 141,372.34 Da | 51.75 | 86.44 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16541 | RING-HC_RNF123 | 1188 | 1228 | 1.01172E-18 | - |
| CDD | cd12882 | SPRY_RNF123 | 137 | 265 | 4.7213E-82 | IPR035773 |
| Pfam | PF10408 | Ubiquitin elongating factor core | 735 | 926 | 9.6E-9 | IPR019474 |
| Pfam | PF00622 | SPRY domain | 148 | 265 | 1.3E-25 | IPR003877 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 1186 | 1232 | 9.0E-7 | - |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 134 | 281 | 2.14E-31 | IPR013320 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1182 | 1234 | 1.27E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1182 | 1237 | 7.5E-10 | IPR013083 |
| Gene3D | G3DSA:2.60.120.920 | - | 126 | 295 | 1.1E-46 | IPR043136 |
| SMART | SM00449 | SPRY_3 | 146 | 268 | 4.9E-36 | IPR003877 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1190 | 1224 | 8.697757 | IPR001841 |
| ProSiteProfiles | PS50188 | B30.2/SPRY domain profile. | 83 | 269 | 17.696379 | IPR001870 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 695 | - | - |
| Coils | Coil | Coil | 765 | 792 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22010.1 | related to KPC1. Encodes a protein predicted to act as a RING E3 ubiquitin ligase. It appears to regulate the stability of the KRP1/ICK1 cyclin dependent kinase inhibitor. Induced by beet severe curly virus (BSCTV) C4 protein. | 0 |
| RefSeq | XP_024013887.1 | E3 ubiquitin-protein ligase RKP isoform X2 [Eutrema salsugineum] | 0 |
| Q9SIZ8 | E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana OX=3702 GN=RKP PE=2 SV=2 | 0 | |
| TrEMBL | V4L6W7 | E3 ubiquitin-protein ligase RKP OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000015mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16987, jg39464 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8229 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026782 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59837, Sbi_jg62730 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24102 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017483 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33317, Sgl38504, Sgl38505, Sgl38542 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001084, gene:ENSEOMG00000004034 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019470, CQ.Regalona.r1.6BG0020510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30199370 |
| Apiaceae | Apium graveolens | 1 | Ag3G01724 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G006290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721719 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G08340, Ftri6G16363 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G22010.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000015m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g017770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1801 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1867 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06360 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0073s00004.v1.0, Dusal.0073s00005.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g06890 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4372 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.743 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014459 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb7G34211, Lb7G34212, Lb8G36358 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3776, BH03.4059, CH03.4331 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578200, gene-QOZ80_7BG0609490 |
| Poaceae | Oryza coarctata | 1 | Oco13G013260 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G358700 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr24G010280, Chr24G014680, Chr28G012220 |
| Poaceae | Zea mays | 1 | Zm00001eb328050_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-311 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6901 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.290, evm.TU.LG15.663 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g14340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1629 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16557 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12144 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.985 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007857 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15096 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4447 |
| Salicaceae | Populus euphratica | 2 | populus_peu13852, populus_peu23010 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615108 |
| Solanaceae | Solanum chilense | 1 | SOLCI004197700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017823 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2684 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0228 |