Basic Information
Locus ID:
Tel7E01G960000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 709139983 | 709145304 | - | Tel7E01G960000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 86,962.39 Da | 39.08 | 81.45 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 286 | 366 | 7.6158E-24 | - |
| Pfam | PF01426 | BAH domain | 30 | 148 | 2.4E-8 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 287 | 330 | 4.1E-7 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 376 | 733 | 1.7E-31 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 180 | 733 | 5.06E-73 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 278 | 331 | 2.06E-9 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 136 | 1.7E-36 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 529 | 699 | 1.1E-236 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 182 | 751 | 1.1E-236 | - |
| SMART | SM00298 | chromo_7 | 286 | 347 | 0.0022 | IPR000953 |
| SMART | SM00439 | BAH_4 | 27 | 151 | 3.7E-14 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 287 | 326 | 10.240701 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 27 | 151 | 15.004745 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 180 | 740 | 44.455296 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 181 | 197 | 1.9E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 424 | 438 | 1.9E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 470 | 483 | 1.9E-10 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_044432529.1 | DNA (cytosine-5)-methyltransferase CMT1-like [Triticum aestivum] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6SLP4 | Cytosine-specific methyltransferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology