Basic Information
Locus ID:
Tel7E01G950300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 704051819 | 704056613 | + | Tel7E01G950300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 80,191.73 Da | 46.00 | 87.04 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 446 | 5.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 360 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 404 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 237 | 267 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 678 | 704 | 0.28 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 203 | 705 | 4.76E-47 | IPR036322 |
| SUPERFAMILY | SSF49354 | PapD-like | 526 | 663 | 1.26E-9 | IPR008962 |
| SUPERFAMILY | SSF49354 | PapD-like | 51 | 160 | 1.81E-9 | IPR008962 |
| Gene3D | G3DSA:2.130.10.10 | - | 199 | 471 | 4.6E-61 | IPR015943 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 49 | 176 | 5.5E-13 | IPR013783 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 526 | 662 | 2.3E-18 | IPR013783 |
| SMART | SM00320 | WD40_4 | 666 | 704 | 0.68 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 404 | 2.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 360 | 8.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 229 | 268 | 0.72 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 317 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 227 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 446 | 8.2E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 370 | 413 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 533 | 660 | 9.554196 | IPR000535 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 449 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 370 | 406 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 336 | 369 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 449 | 9.678328 | - |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 52 | 174 | 8.745502 | IPR000535 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 391 | 405 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 433 | 447 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 391 | 405 | 6.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 347 | 361 | 6.3E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.3 | - | 0 |
| RefSeq | XP_044425388.1 | uncharacterized protein LOC123149743 isoform X2 [Triticum aestivum] | 0 |
| Q9C827 | Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RP24 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026662 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G1006300, Tel7E01G950300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG068980, gene_TRIDC6BG007330 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G544600.1, TraesCS7A02G564900.2 ... |