HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Tel7E01G800300
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description: BTB/POZ domain
Maps and Mapping Data
Chromosome Start End Strand ID
chr7 620208759 620211035 + Tel7E01G800300
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.03 28,903.87 Da 40.63 91.44 -0.04
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00121 MATH 18 134 1.47303E-5 IPR002083
Pfam PF00651 BTB/POZ domain 162 245 9.2E-21 IPR000210
SUPERFAMILY SSF54695 POZ domain 151 241 1.22E-25 IPR011333
SUPERFAMILY SSF49599 TRAF domain-like 14 139 6.21E-16 -
Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 143 255 3.5E-31 IPR011333
Gene3D G3DSA:2.60.210.10 Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 16 138 3.8E-12 IPR008974
SMART SM00225 BTB_4 171 256 8.1E-11 IPR000210
ProSiteProfiles PS50097 BTB domain profile. 171 238 17.231152 IPR000210
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K10523 (speckle-type POZ protein)
Pathway:
ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G39760.2 BTB/POZ/MATH-domains containing protein. 0
RefSeq XP_037458605.1 BTB/POZ and MATH domain-containing protein 1-like isoform X2 [Triticum dicoccoides] 0
Swiss-Prot O22286 BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 0
TrEMBL A0A8R7VBX5 BTB domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 5 AH06.2612, BH06.2420, BH06.2421, BH06.2422, CH06.2709
Poaceae Eleusine coracana subsp. coracana 12 gene-QOZ80_5AG0391060, gene-QOZ80_6AG0515720 ...
gene-QOZ80_6AG0547660, gene-QOZ80_6AG0547680, gene-QOZ80_6AG0547700, gene-QOZ80_6AG0547710, gene-QOZ80_6BG0501300, gene-QOZ80_6BG0501320, gene-QOZ80_6BG0501340, gene-QOZ80_6BG0501350, gene-QOZ80_6BG0501360, gene-QOZ80_7AG0564860
Poaceae Hordeum vulgare 9 HORVU.MOREX.r3.7HG0724460.1.CDS1 ...
HORVU.MOREX.r3.7HG0724690.1.CDS1, HORVU.MOREX.r3.7HG0736960.1.CDS1, HORVU.MOREX.r3.7HG0737010.1.CDS1, HORVU.MOREX.r3.7HG0737030.1.CDS1, HORVU.MOREX.r3.7HG0737070.1.CDS1, HORVU.MOREX.r3.7HG0737090.1.CDS1, HORVU.MOREX.r3.7HG0737240.1.CDS1, HORVU.MOREX.r3.7HG0737300.1.CDS1
Poaceae Lolium multiflorum 19 gene-QYE76_001932, gene-QYE76_001934, gene-QYE76_001937 ...
gene-QYE76_014272, gene-QYE76_020497, gene-QYE76_034670, gene-QYE76_034671, gene-QYE76_034695, gene-QYE76_036220, gene-QYE76_036221, gene-QYE76_036227, gene-QYE76_036232, gene-QYE76_036233, gene-QYE76_036234, gene-QYE76_036240, gene-QYE76_036248, gene-QYE76_036249, gene-QYE76_036250, gene-QYE76_036252
Poaceae Oryza coarctata 4 Oco11G006600, Oco11G014910, Oco12G015040, Oco12G015070
Poaceae Oryza sativa 5 LOC_Os06g14060.1, LOC_Os06g45720.1, LOC_Os06g45730.1 ...
LOC_Os06g45790.1, LOC_Os08g09830.1
Poaceae Paspalum vaginatum 7 gene-BS78_10G106800, gene-BS78_10G221900 ...
gene-BS78_10G222400, gene-BS78_10G222500, gene-BS78_10G222600, gene-BS78_10G222700, gene-BS78_10G222800
Poaceae Puccinellia tenuiflora 4 Pt_Chr0103206, Pt_Chr0103207, Pt_Chr0103208, Pt_Chr0401303
Poaceae Sporobolus alterniflorus 4 Chr10G019930, Chr10G019940, Chr11G002710, Chr27G005970
Poaceae Thinopyrum elongatum 12 Tel7E01G682200, Tel7E01G797600, Tel7E01G799300 ...
Tel7E01G799900, Tel7E01G800000, Tel7E01G800200, Tel7E01G800300, Tel7E01G800400, Tel7E01G800500, Tel7E01G800700, Tel7E01G801600, Tel7E01G803200
Poaceae Triticum dicoccoides 19 gene_TRIDC7AG055940, gene_TRIDC7AG065750 ...
gene_TRIDC7AG065900, gene_TRIDC7AG065940, gene_TRIDC7AG065960, gene_TRIDC7AG065990, gene_TRIDC7AG066010, gene_TRIDC7AG066030, gene_TRIDC7AG066050, gene_TRIDC7AG066110, gene_TRIDC7BG059400, gene_TRIDC7BG059460, gene_TRIDC7BG059480, gene_TRIDC7BG059490, gene_TRIDC7BG059500, gene_TRIDC7BG059530, gene_TRIDC7BG059710, gene_TRIDC7BG059730, gene_TRIDC7BG059750
Poaceae Triticum aestivum 36 TraesCS7A02G401800.1.cds1, TraesCS7A02G471200.1.cds1 ...
TraesCS7A02G471400.1.cds1, TraesCS7A02G471800.1.cds1, TraesCS7A02G471900.1.cds1, TraesCS7A02G472000.1.cds1, TraesCS7A02G472200.1.cds1, TraesCS7A02G472400.1, TraesCS7A02G472500.1, TraesCS7A02G472800.1.cds1, TraesCS7A02G473100.1, TraesCS7A02G473500.1.cds1, TraesCS7A02G474300.1.cds1, TraesCS7A02G474500.1.cds1, TraesCS7B02G373200.1.cds1, TraesCS7B02G373600.1.cds1, TraesCS7B02G373700.1.cds1, TraesCS7B02G373800.1, TraesCS7B02G373900.2, TraesCS7B02G374000.1.cds1, TraesCS7B02G374200.1, TraesCS7B02G375000.1, TraesCS7B02G375700.1.cds1, TraesCS7B02G375800.1.cds1, TraesCS7B02G376100.1.cds1, TraesCS7D02G395400.1, TraesCS7D02G458600.1.cds1, TraesCS7D02G459200.1.cds1, TraesCS7D02G459300.1.cds1, TraesCS7D02G459400.1.cds1, TraesCS7D02G459500.1.cds1, TraesCS7D02G459600.1, TraesCS7D02G459700.1.cds1, TraesCS7D02G459800.1.cds1, TraesCS7D02G460100.1.cds1, TraesCS7D02G461300.1.cds1
Poaceae Zea mays 8 Zm00001eb274280_P004, Zm00001eb274300_P001 ...
Zm00001eb274310_P001, Zm00001eb274320_P001, Zm00001eb305500_P001, Zm00001eb306050_P002, Zm00001eb389910_P001, Zm00001eb409490_P001
Poaceae Zoysia japonica 3 nbis-gene-40524, nbis-gene-40525, nbis-gene-43180
Poaceae Zoysia macrostachya 3 Zma_g29449, Zma_g33228, Zma_g33229
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.