Basic Information
Locus ID:
Tel7E01G662300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 535462392 | 535463613 | + | Tel7E01G662300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 34,502.38 Da | 59.95 | 71.59 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 252 | 293 | 7.8E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 300 | 4.08E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 309 | 7.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 252 | 292 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 252 | 293 | 11.545086 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 326 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02340.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048546743.1 | E3 ubiquitin-protein ligase RING1-like [Triticum urartu] | 0 |
| Q9SPL2 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7R7Q1 | RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10541, jg6355 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8451 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036218 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40032, Sbi_jg55359 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14301 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014051 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12191, Sgl17563 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016823, gene:ENSEOMG00000033883 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0021160, CQ.Regalona.r1.1BG0003270 |
| Apiaceae | Apium graveolens | 1 | Ag3G02533 |
| Asteraceae | Flaveria trinervia | 4 | Ftri18G33999, Ftri1G22102, Ftri1G33111, Ftri8G11086 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G64920.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005668m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g28000.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g033760.2N, BniB03g033770.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0948 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002567 |
| Poaceae | Echinochloa crus-galli | 2 | AH06.2374, BH06.2166 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0545610, gene-QOZ80_6BG0499100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0722700.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035157 |
| Poaceae | Oryza coarctata | 2 | Oco11G013330, Oco12G013470 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g42700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G199300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G018460, Chr11G004120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G662300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG054450, gene_TRIDC7BG047190 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G391700.1.cds1, TraesCS7B02G293600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb387590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40957, nbis-gene-9975 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30851, Zma_g33102 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG04.3350, evm.TU.LG12.1659, evm.TU.LG14.856 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613824 |
| Solanaceae | Solanum chilense | 1 | SOLCI000622900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031553 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31285_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2884 |