Basic Information
Locus ID:
Tel7E01G625500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 509622254 | 509629400 | + | Tel7E01G625500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 80,905.49 Da | 48.21 | 80.65 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 42 | 155 | 9.00384E-28 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 409 | 483 | 7.4E-6 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 349 | 409 | 3.1E-11 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 6 | 347 | 1.3E-106 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 76 | 150 | 8.0E-8 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 198 | 347 | 1.57E-64 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 348 | 475 | 4.71E-37 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 5 | 195 | 3.08E-46 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 349 | 465 | 2.6E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 35 | 191 | 1.5E-153 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 6 | 345 | 1.5E-153 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 595 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 525 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.5 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_044437227.1 | nuclear poly(A) polymerase 4-like isoform X3 [Triticum aestivum] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453SDE4 | polynucleotide adenylyltransferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology