Basic Information
Locus ID:
Tel7E01G585700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 475103037 | 475107004 | - | Tel7E01G585700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 37,546.47 Da | 46.49 | 71.44 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 76 | 114 | 2.72637E-14 | - |
| CDD | cd03829 | Sina | 192 | 320 | 9.01758E-68 | - |
| Pfam | PF03145 | Seven in absentia protein family | 120 | 319 | 3.4E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 131 | 323 | 6.54E-50 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 119 | 1.5E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 190 | 319 | 1.9E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 186 | 4.6E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 120 | 2.0E-6 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 131 | 191 | 14.236708 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 78 | 114 | 9.464913 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_037464965.1 | E3 ubiquitin-protein ligase SINAT5-like [Triticum dicoccoides] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SH47 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology