Basic Information
Locus ID:
Tel7E01G565300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 459610993 | 459613624 | - | Tel7E01G565300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 51,884.75 Da | 41.85 | 78.46 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 125 | 440 | 5.7E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 86 | 478 | 4.09E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 86 | 474 | 1.3E-114 | IPR012334 |
| SMART | SM00710 | pbh1 | 334 | 355 | 4.7 | IPR006626 |
| SMART | SM00710 | pbh1 | 363 | 384 | 670.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 231 | 280 | 1700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 281 | 302 | 1500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 304 | 324 | 4300.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 311 | 324 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_044442656.1 | polygalacturonase At1g48100-like [Triticum aestivum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453S5J2 | Polygalacturonase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology