Basic Information
Locus ID:
Tel7E01G535200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 431241166 | 431247267 | - | Tel7E01G535200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 66,154.26 Da | 47.06 | 86.18 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 269 | 555 | 1.8E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 512 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 343 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 555 | 1.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 385 | 0.069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 298 | 1.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 257 | 555 | 2.24E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 587 | 1.7E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 520 | 2.4E-62 | IPR015943 |
| SMART | SM00320 | WD40_4 | 429 | 467 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 513 | 0.99 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 1.9E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 151 | 2.7E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 3.9E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 8.5E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 300 | 9.941962 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 348 | 10.627413 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.207549 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 101 | 151 | 10.693171 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 558 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 565 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 12.17936 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 372 | 386 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037457228.1 | WD repeat-containing protein 26 homolog [Triticum dicoccoides] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6RGA6 | WD repeat-containing protein 26 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology