Basic Information
Locus ID:
Tel7E01G510400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 400354045 | 400366393 | - | Tel7E01G510400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 115,298.97 Da | 43.75 | 78.36 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 891 | 996 | 5.81669E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 298 | 653 | 1.54719E-81 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 310 | 730 | 3.3E-68 | IPR000330 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 767 | 811 | 8.7E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 887 | 986 | 1.7E-14 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 762 | 814 | 1.85E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 661 | 1043 | 1.23E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 282 | 653 | 1.68E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 668 | 1044 | 1.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 270 | 355 | 1.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 424 | 519 | 1.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 752 | 819 | 1.2E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 537 | 654 | 4.9E-28 | IPR038718 |
| SMART | SM00184 | ring_2 | 768 | 806 | 8.1E-5 | IPR001841 |
| SMART | SM00490 | helicmild6 | 903 | 986 | 4.4E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 294 | 634 | 6.9E-25 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 879 | 1039 | 13.392002 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 768 | 807 | 11.132002 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 446 | 615 | 11.99291 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 783 | 792 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 118 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_037457875.1 | helicase-like transcription factor CHR28 isoform X1 [Triticum dicoccoides] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453RW51 | Helicase ATP-binding domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology