halophFGD

Basic Information

Locus ID: Tel7E01G484600

Species & Taxonomic ID: Thinopyrum elongatum & 4588

Genome Assembly: GWHABKY00000000

Description: NOT2 / NOT3 / NOT5 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	331979942	331980229	-	Tel7E01G484600

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.26	11,007.53 Da	36.23	70.84	-0.73

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K12605 (CCR4-NOT transcription complex subunit 2)

Pathway:

ko03018 (RNA degradation) map03018 (RNA degradation)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_048538207.1	uncharacterized protein LOC125517020 [Triticum urartu]	0
TrEMBL	M7ZU61	Putative NOT transcription complex subunit VIP2 OS=Triticum urartu OX=4572 GN=TRIUR3_10392 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg22385, Sbi_jg25863
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007598, GOSA_00020792
Amaranthaceae	Suaeda glauca	1	Sgl20234
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... gene:ENSEOMG00000014439, gene:ENSEOMG00000021206, gene:ENSEOMG00000032143, gene:ENSEOMG00000044692
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... CQ.Regalona.r1.6AG0001550
Asteraceae	Flaveria trinervia	16	Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... Ftri17G20434, Ftri18G10643, Ftri18G13665, Ftri3G02489, Ftri4G14462, Ftri5G10762, Ftri6G09660, Ftri7G32935, Ftri7G33047, Ftri8G20906, Ftri9G08243, Ftri9G31977
Poaceae	Echinochloa crus-galli	51	AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... AH02.4536, AH03.1525, AH03.2542, AH03.3965, AH04.1546, AH04.857, AH05.694, AH07.2325, AH07.2725, AH08.227, BH01.3744, BH01.442, BH01.4776, BH01.4855, BH02.3376, BH03.266, BH05.2619, BH06.1851, BH06.1999, BH06.2556, BH06.2850, BH07.2229, BH07.2676, BH07.4192, BH08.1004, BH09.493, CH01.2044, CH01.2149, CH01.2234, CH01.3240, CH01.3413, CH02.3232, CH03.2630, CH03.3774, CH04.126, CH04.165, CH04.1903, CH05.3093, CH05.4464, CH07.2011, CH07.2447, CH09.1936, CH09.2670, CH09.2864, CH09.627
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_4BG0332600
Poaceae	Hordeum vulgare	36	HORVU.MOREX.r3.1HG0031420.1.CDS1 ... HORVU.MOREX.r3.1HG0083430.1.CDS1, HORVU.MOREX.r3.2HG0119660.1.CDS1, HORVU.MOREX.r3.2HG0157690.1.CDS1, HORVU.MOREX.r3.2HG0172390.1, HORVU.MOREX.r3.2HG0197280.1.CDS1, HORVU.MOREX.r3.3HG0277230.1.CDS1, HORVU.MOREX.r3.3HG0287370.1.CDS1, HORVU.MOREX.r3.4HG0361670.1.CDS1, HORVU.MOREX.r3.4HG0362580.1.CDS1, HORVU.MOREX.r3.4HG0389020.1.CDS1, HORVU.MOREX.r3.4HG0413260.1.CDS1, HORVU.MOREX.r3.5HG0429430.1.CDS1, HORVU.MOREX.r3.5HG0432680.1.CDS1, HORVU.MOREX.r3.5HG0455710.1.CDS1, HORVU.MOREX.r3.5HG0458740.1, HORVU.MOREX.r3.5HG0468170.1, HORVU.MOREX.r3.5HG0470180.1.CDS1, HORVU.MOREX.r3.5HG0470490.1.CDS1, HORVU.MOREX.r3.5HG0484160.1.CDS1, HORVU.MOREX.r3.6HG0539110.1.CDS1, HORVU.MOREX.r3.6HG0555430.1, HORVU.MOREX.r3.6HG0558830.1.CDS1, HORVU.MOREX.r3.6HG0585190.1.CDS1, HORVU.MOREX.r3.6HG0605780.1.CDS1, HORVU.MOREX.r3.6HG0608230.1.CDS1, HORVU.MOREX.r3.6HG0608930.1.CDS1, HORVU.MOREX.r3.6HG0609870.1.CDS1, HORVU.MOREX.r3.6HG0614030.1, HORVU.MOREX.r3.7HG0665290.1.CDS1, HORVU.MOREX.r3.7HG0675970.1.CDS1, HORVU.MOREX.r3.7HG0686270.1.CDS1, HORVU.MOREX.r3.7HG0690540.1.CDS1, HORVU.MOREX.r3.7HG0694470.1.CDS1, HORVU.MOREX.r3.7HG0706070.1.CDS1, HORVU.MOREX.r3.7HG0712050.1.CDS1
Poaceae	Lolium multiflorum	14	gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... gene-QYE76_031598, gene-QYE76_033915, gene-QYE76_036735, gene-QYE76_041797, gene-QYE76_049256, gene-QYE76_050316, gene-QYE76_054552, gene-QYE76_057534, gene-QYE76_063234, gene-QYE76_067297, gene-QYE76_068230
Poaceae	Oryza coarctata	1	Oco02G011730
Poaceae	Paspalum vaginatum	12	gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... gene-BS78_02G158400, gene-BS78_03G144500, gene-BS78_06G011500, gene-BS78_07G103100, gene-BS78_08G171400, gene-BS78_09G092300, gene-BS78_09G127100, gene-BS78_K094000, gene-BS78_K232400
Poaceae	Sporobolus alterniflorus	58	Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... Chr03G008690, Chr03G014360, Chr03G020670, Chr04G004920, Chr04G012320, Chr04G016020, Chr05G014850, Chr05G034680, Chr06G003600, Chr06G022090, Chr06G025580, Chr07G002900, Chr07G002910, Chr07G004700, Chr07G011230, Chr07G024870, Chr08G005710, Chr09G009570, Chr09G009580, Chr09G011790, Chr10G005280, Chr10G005290, Chr10G015210, Chr10G016380, Chr10G016940, Chr11G022120, Chr12G011970, Chr12G011980, Chr12G028930, Chr12G033610, Chr14G008010, Chr14G008620, Chr15G006070, Chr15G006080, Chr15G017130, Chr15G018500, Chr17G004410, Chr19G015230, Chr20G005550, Chr20G007320, Chr20G008180, Chr20G010600, Chr20G011050, Chr21G005620, Chr21G006060, Chr23G008510, Chr23G017330, Chr23G017340, Chr23G018540, Chr26G012240, Chr26G013860, Chr26G016800, Chr27G001090, Chr31G001510
Poaceae	Thinopyrum elongatum	6	Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... Tel6E01G071300, Tel6E01G071400, Tel7E01G484600
Poaceae	Triticum dicoccoides	1	gene_TRIDC7AG060430
Poaceae	Zoysia japonica	1	nbis-gene-4890
Solanaceae	Lycium barbarum	88	gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... gene-LOC132601573, gene-LOC132601684, gene-LOC132602294, gene-LOC132602375, gene-LOC132602429, gene-LOC132603304, gene-LOC132603305, gene-LOC132604055, gene-LOC132604455, gene-LOC132606488, gene-LOC132607687, gene-LOC132607709, gene-LOC132607761, gene-LOC132607768, gene-LOC132607917, gene-LOC132607943, gene-LOC132607992, gene-LOC132607993, gene-LOC132608100, gene-LOC132608378, gene-LOC132609516, gene-LOC132609560, gene-LOC132609609, gene-LOC132610374, gene-LOC132611779, gene-LOC132611785, gene-LOC132611807, gene-LOC132611832, gene-LOC132611837, gene-LOC132612053, gene-LOC132612165, gene-LOC132612201, gene-LOC132612646, gene-LOC132612968, gene-LOC132612997, gene-LOC132613026, gene-LOC132613111, gene-LOC132613125, gene-LOC132613148, gene-LOC132613217, gene-LOC132613435, gene-LOC132613816, gene-LOC132618126, gene-LOC132618148, gene-LOC132620134, gene-LOC132620753, gene-LOC132621465, gene-LOC132624192, gene-LOC132624359, gene-LOC132624397, gene-LOC132624406, gene-LOC132628580, gene-LOC132628589, gene-LOC132628681, gene-LOC132628733, gene-LOC132628864, gene-LOC132629048, gene-LOC132630311, gene-LOC132631151, gene-LOC132631279, gene-LOC132631539, gene-LOC132631704, gene-LOC132633629, gene-LOC132637024, gene-LOC132637083, gene-LOC132637342, gene-LOC132637683, gene-LOC132637737, gene-LOC132638126, gene-LOC132639158, gene-LOC132639500, gene-LOC132639506, gene-LOC132639599, gene-LOC132639606, gene-LOC132639741, gene-LOC132639932, gene-LOC132640665, gene-LOC132640975, gene-LOC132641207, gene-LOC132641299, gene-LOC132642290, gene-LOC132642335, gene-LOC132642451, gene-LOC132644299, gene-LOC132644396
Solanaceae	Solanum pennellii	1	gene-LOC107016424
Tamaricaceae	Reaumuria soongarica	22	MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... STRG.11171_chr05_-, STRG.14935_chr08_-, STRG.17875_chr09_+, STRG.2271_chr01_+, STRG.24870_chr08_+, STRG.26144_chr11_+, STRG.26385_chr11_+, STRG.26543_chr11_-, STRG.26574_chr11_+, STRG.28350_chr04_+, STRG.30337_chr10_-, STRG.31126_chr11_+, STRG.31648_chr11_+, STRG.32148_chr09_+, STRG.3814_chr02_-, STRG.4509_chr03_-, STRG.8526_chr06_+, STRG.8964_chr03_+, STRG.9014_chr03_-