Basic Information
Locus ID:
Tel7E01G478600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Rhamnogalacturonate lyase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 323597539 | 323601719 | + | Tel7E01G478600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 76,260.96 Da | 35.44 | 72.79 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 352 | 452 | 3.02642E-34 | IPR029413 |
| CDD | cd10320 | RGL4_N | 26 | 321 | 2.96502E-77 | - |
| CDD | cd10317 | RGL4_C | 464 | 652 | 9.34687E-60 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 24 | 221 | 2.0E-91 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 462 | 651 | 7.7E-53 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 377 | 447 | 3.9E-23 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 459 | 652 | 4.82E-52 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 33 | 314 | 4.71E-9 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 351 | 447 | 1.67E-7 | IPR013784 |
| Gene3D | G3DSA:2.70.98.10 | - | 27 | 328 | 8.7E-8 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 460 | 652 | 3.9E-15 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 350 | 448 | 3.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_044425489.1 | probable rhamnogalacturonate lyase B [Triticum aestivum] | 0 |
| TrEMBL | A0A3B6RIZ9 | rhamnogalacturonan endolyase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology